J3_3J73_035

3D structure

PDB id

3J73 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AUAGCUCAGGGUAGAGCAGG*CCGUGUCC*GU

Length

30 nucleotides

Bulged bases

3J73|1|S5|G|18, 3J73|1|S5|G|19, 3J73|1|S5|U|20, 3J73|1|S5|U|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J73|1|S5|A|7
3J73|1|S5|U|8
3J73|1|S5|A|9
3J73|1|S5|G|10
3J73|1|S5|C|11
3J73|1|S5|U|12
3J73|1|S5|C|13
3J73|1|S5|A|14
3J73|1|S5|G|15
3J73|1|S5|G|18
3J73|1|S5|G|19
3J73|1|S5|U|20
3J73|1|S5|A|21
3J73|1|S5|G|22
3J73|1|S5|A|23
3J73|1|S5|G|24
3J73|1|S5|C|25
3J73|1|S5|A|26
3J73|1|S5|G|27
3J73|1|S5|G|28
*
3J73|1|S5|C|42
3J73|1|S5|C|43
3J73|1|S5|G|44
3J73|1|S5|U|45
3J73|1|S5|G|46
3J73|1|S5|U|47
3J73|1|S5|C|48
3J73|1|S5|C|49
*
3J73|1|S5|G|65
3J73|1|S5|U|66

Current chains

Chain S5

A/P tRNA

Nearby chains

Chain 5

28S ribosomal RNA

Chain I

Ribosomal protein uL16

Chain Se

Ribosomal protein eS30