J3_3J77_042
3D structure
- PDB id
- 3J77 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.2 Å
Loop
- Sequence
- UAGAUG*CAUAGCAGG*CGAAUUGCAAUGUCA
- Length
- 30 nucleotides
- Bulged bases
- 3J77|1|2S|A|3215, 3J77|1|2S|C|3217, 3J77|1|2S|A|3218, 3J77|1|2S|A|3268, 3J77|1|2S|U|3270, 3J77|1|2S|C|3272, 3J77|1|2S|G|3276, 3J77|1|2S|C|3278
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3J77_042 not in the Motif Atlas
- Homologous match to J3_8P9A_064
- Geometric discrepancy: 0.201
- The information below is about J3_8P9A_064
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_03190.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-cWW-F-F-F-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
3J77|1|2S|U|3171
3J77|1|2S|A|3172
3J77|1|2S|G|3173
3J77|1|2S|A|3174
3J77|1|2S|U|3175
3J77|1|2S|G|3176
*
3J77|1|2S|C|3212
3J77|1|2S|A|3213
3J77|1|2S|U|3214
3J77|1|2S|A|3215
3J77|1|2S|G|3216
3J77|1|2S|C|3217
3J77|1|2S|A|3218
3J77|1|2S|G|3219
3J77|1|2S|G|3220
*
3J77|1|2S|C|3265
3J77|1|2S|G|3266
3J77|1|2S|A|3267
3J77|1|2S|A|3268
3J77|1|2S|U|3269
3J77|1|2S|U|3270
3J77|1|2S|G|3271
3J77|1|2S|C|3272
3J77|1|2S|A|3273
3J77|1|2S|A|3274
3J77|1|2S|U|3275
3J77|1|2S|G|3276
3J77|1|2S|U|3277
3J77|1|2S|C|3278
3J77|1|2S|A|3279
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 64
- 60S ribosomal protein L14
- Chain 66
- 60S ribosomal protein L16
- Chain 67
- 60S ribosomal protein L17
- Chain 83
- 60S ribosomal protein L33
- Chain L6
- 60S ribosomal protein L6
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