3D structure

PDB id
3J77 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)
Experimental method
ELECTRON MICROSCOPY
Resolution
6.2 Å

Loop

Sequence
AC*GAUACGU*AAUCU
Length
14 nucleotides
Bulged bases
3J77|1|8S|U|60, 3J77|1|8S|C|62
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_3J77_044 not in the Motif Atlas
Homologous match to J3_8P9A_067
Geometric discrepancy: 0.1571
The information below is about J3_8P9A_067
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_35667.2
Basepair signature
cWW-cWW-F-F-F-cWW-F-cWW
Number of instances in this motif group
7

Unit IDs

3J77|1|8S|A|44
3J77|1|8S|C|45
*
3J77|1|8S|G|58
3J77|1|8S|A|59
3J77|1|8S|U|60
3J77|1|8S|A|61
3J77|1|8S|C|62
3J77|1|8S|G|63
3J77|1|8S|U|64
*
3J77|1|8S|A|96
3J77|1|8S|A|97
3J77|1|8S|U|98
3J77|1|8S|C|99
3J77|1|8S|U|100

Current chains

Chain 8S
5.8S ribosomal RNA

Nearby chains

Chain 75
60S ribosomal protein L25
Chain 85
60S ribosomal protein L35
Chain 87
60S ribosomal protein L37
Chain 89
60S ribosomal protein L39

Coloring options:


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