J3_3J78_026
3D structure
- PDB id
- 3J78 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.3 Å
Loop
- Sequence
- AGCU*ACGUUCUAGCAUUCAAG*UGAU
- Length
- 25 nucleotides
- Bulged bases
- 3J78|1|2S|G|2549, 3J78|1|2S|U|2550, 3J78|1|2S|U|2551, 3J78|1|2S|A|2554, 3J78|1|2S|U|2558, 3J78|1|2S|U|2559, 3J78|1|2S|C|2560
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3J78_026 not in the Motif Atlas
- Homologous match to J3_8C3A_009
- Geometric discrepancy: 0.2788
- The information below is about J3_8C3A_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_02167.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-tHH-tHS-cWW
- Number of instances in this motif group
- 1
Unit IDs
3J78|1|2S|A|2529
3J78|1|2S|G|2530
3J78|1|2S|C|2531
3J78|1|2S|U|2532
*
3J78|1|2S|A|2547
3J78|1|2S|C|2548
3J78|1|2S|G|2549
3J78|1|2S|U|2550
3J78|1|2S|U|2551
3J78|1|2S|C|2552
3J78|1|2S|U|2553
3J78|1|2S|A|2554
3J78|1|2S|G|2555
3J78|1|2S|C|2556
3J78|1|2S|A|2557
3J78|1|2S|U|2558
3J78|1|2S|U|2559
3J78|1|2S|C|2560
3J78|1|2S|A|2561
3J78|1|2S|A|2562
3J78|1|2S|G|2563
*
3J78|1|2S|U|2578
3J78|1|2S|G|2579
3J78|1|2S|A|2580
3J78|1|2S|U|2581
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 75
- 60S ribosomal protein L25
- Chain 77
- 60S ribosomal protein L27
- Chain 80
- 60S ribosomal protein L30
- Chain 84
- 60S ribosomal protein L34
- Chain 93
- 60S ribosomal protein L43
- Chain L2
- 60S ribosomal protein L2
- Chain L8
- 60S ribosomal protein L8
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