J3_3J78_029
3D structure
- PDB id
- 3J78 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.3 Å
Loop
- Sequence
- CAU*AGAUG*CUG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3J78_029 not in the Motif Atlas
- Homologous match to J3_5TBW_015
- Geometric discrepancy: 0.294
- The information below is about J3_5TBW_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_48314.1
- Basepair signature
- cWW-cWW-F-cWW-F-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
3J78|1|2S|C|3298
3J78|1|2S|A|3299
3J78|1|2S|U|3300
*
3J78|1|2S|A|3314
3J78|1|2S|G|3315
3J78|1|2S|A|3316
3J78|1|2S|U|3317
3J78|1|2S|G|3318
*
3J78|1|2S|C|3388
3J78|1|2S|U|3389
3J78|1|2S|G|3390
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 67
- 60S ribosomal protein L17
- Chain 81
- 60S ribosomal protein L31
- Chain L3
- 60S ribosomal protein L3
Coloring options: