J3_3J78_032
3D structure
- PDB id
- 3J78 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.3 Å
Loop
- Sequence
- AGAUAAAAAAUCAAUG*CUCUUUG*CAU
- Length
- 26 nucleotides
- Bulged bases
- 3J78|1|1S|U|238, 3J78|1|1S|C|239, 3J78|1|1S|U|240
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3J78|1|1S|A|213
3J78|1|1S|G|214
3J78|1|1S|A|215
3J78|1|1S|U|216
3J78|1|1S|A|217
3J78|1|1S|A|218
3J78|1|1S|A|219
3J78|1|1S|A|220
3J78|1|1S|A|221
3J78|1|1S|A|222
3J78|1|1S|U|223
3J78|1|1S|C|224
3J78|1|1S|A|225
3J78|1|1S|A|226
3J78|1|1S|U|227
3J78|1|1S|G|228
*
3J78|1|1S|C|237
3J78|1|1S|U|238
3J78|1|1S|C|239
3J78|1|1S|U|240
3J78|1|1S|U|241
3J78|1|1S|U|242
3J78|1|1S|G|243
*
3J78|1|1S|C|250
3J78|1|1S|A|251
3J78|1|1S|U|252
Current chains
- Chain 1S
- 18S ribosomal RNA
Nearby chains
- Chain 11
- 40S ribosomal protein S11
- Chain S4
- 40S ribosomal protein S4
- Chain S6
- 40S ribosomal protein S6
Coloring options: