J3_3J78_035
3D structure
- PDB id
- 3J78 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.3 Å
Loop
- Sequence
- CAAAUUUGAAAU*AGUUGUAAUUUGGAG*CGAAG
- Length
- 32 nucleotides
- Bulged bases
- 3J78|1|2S|U|117, 3J78|1|2S|U|147, 3J78|1|2S|G|156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3J78|1|2S|C|113
3J78|1|2S|A|114
3J78|1|2S|A|115
3J78|1|2S|A|116
3J78|1|2S|U|117
3J78|1|2S|U|118
3J78|1|2S|U|119
3J78|1|2S|G|120
3J78|1|2S|A|121
3J78|1|2S|A|122
3J78|1|2S|A|123
3J78|1|2S|U|124
*
3J78|1|2S|A|144
3J78|1|2S|G|145
3J78|1|2S|U|146
3J78|1|2S|U|147
3J78|1|2S|G|148
3J78|1|2S|U|149
3J78|1|2S|A|150
3J78|1|2S|A|151
3J78|1|2S|U|152
3J78|1|2S|U|153
3J78|1|2S|U|154
3J78|1|2S|G|155
3J78|1|2S|G|156
3J78|1|2S|A|157
3J78|1|2S|G|158
*
3J78|1|2S|C|263
3J78|1|2S|G|264
3J78|1|2S|A|265
3J78|1|2S|A|266
3J78|1|2S|G|267
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 63
- 60S ribosomal protein L13
- Chain 65
- 60S ribosomal protein L15
- Chain 85
- 60S ribosomal protein L35
- Chain 86
- 60S ribosomal protein L36
- Chain 8S
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain L8
- 60S ribosomal protein L8
Coloring options: