J3_3J78_040

3D structure

PDB id

3J78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

CA*UAACUGAAU*AGGAAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J78|1|2S|C|1631
3J78|1|2S|A|1632
*
3J78|1|2S|U|1641
3J78|1|2S|A|1642
3J78|1|2S|A|1643
3J78|1|2S|C|1644
3J78|1|2S|U|1645
3J78|1|2S|G|1646
3J78|1|2S|A|1647
3J78|1|2S|A|1648
3J78|1|2S|U|1649
*
3J78|1|2S|A|1806
3J78|1|2S|G|1807
3J78|1|2S|G|1808
3J78|1|2S|A|1809
3J78|1|2S|A|1810
3J78|1|2S|G|1811

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 77

60S ribosomal protein L27

Chain 84

60S ribosomal protein L34

Chain L2

60S ribosomal protein L2