J3_3J78_043
3D structure
- PDB id
- 3J78 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.3 Å
Loop
- Sequence
- GUC*GCCUAUCGAUCC*GGUGCC
- Length
- 21 nucleotides
- Bulged bases
- 3J78|1|2S|C|2760, 3J78|1|2S|C|2797
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3J78_043 not in the Motif Atlas
- Homologous match to J3_8P9A_061
- Geometric discrepancy: 0.1332
- The information below is about J3_8P9A_061
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20992.1
- Basepair signature
- cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
3J78|1|2S|G|2651
3J78|1|2S|U|2652
3J78|1|2S|C|2653
*
3J78|1|2S|G|2754
3J78|1|2S|C|2755
3J78|1|2S|C|2756
3J78|1|2S|U|2757
3J78|1|2S|A|2758
3J78|1|2S|U|2759
3J78|1|2S|C|2760
3J78|1|2S|G|2761
3J78|1|2S|A|2762
3J78|1|2S|U|2763
3J78|1|2S|C|2764
3J78|1|2S|C|2765
*
3J78|1|2S|G|2793
3J78|1|2S|G|2794
3J78|1|2S|U|2795
3J78|1|2S|G|2796
3J78|1|2S|C|2797
3J78|1|2S|C|2798
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 68
- 60S ribosomal protein L18
- Chain 71
- 60S ribosomal protein L21
- Chain 78
- 60S ribosomal protein L28
- Chain 92
- 60S ribosomal protein L42
- Chain ET
- Transfer RNA; tRNA
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