J3_3J78_046
3D structure
- PDB id
- 3J78 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.3 Å
Loop
- Sequence
- AUGAAAAGAAC*GAGUGAAAAAGUACGUGAAAU*ACGGAUCU
- Length
- 40 nucleotides
- Bulged bases
- 3J78|1|2S|A|398, 3J78|1|2S|A|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3J78|1|2S|A|369
3J78|1|2S|U|370
3J78|1|2S|G|371
3J78|1|2S|A|372
3J78|1|2S|A|373
3J78|1|2S|A|374
3J78|1|2S|A|375
3J78|1|2S|G|376
3J78|1|2S|A|377
3J78|1|2S|A|378
3J78|1|2S|C|379
*
3J78|1|2S|G|390
3J78|1|2S|A|391
3J78|1|2S|G|392
3J78|1|2S|U|393
3J78|1|2S|G|394
3J78|1|2S|A|395
3J78|1|2S|A|396
3J78|1|2S|A|397
3J78|1|2S|A|398
3J78|1|2S|A|399
3J78|1|2S|G|400
3J78|1|2S|U|401
3J78|1|2S|A|402
3J78|1|2S|C|403
3J78|1|2S|G|404
3J78|1|2S|U|405
3J78|1|2S|G|406
3J78|1|2S|A|407
3J78|1|2S|A|408
3J78|1|2S|A|409
3J78|1|2S|U|410
*
3J78|1|8S|A|13
3J78|1|8S|C|14
3J78|1|8S|G|15
3J78|1|8S|G|16
3J78|1|8S|A|17
3J78|1|8S|U|18
3J78|1|8S|C|19
3J78|1|8S|U|20
Current chains
- Chain 2S
- 25S ribosomal RNA
- Chain 8S
- 5.8S ribosomal RNA
Nearby chains
- Chain 67
- 60S ribosomal protein L17
- Chain 76
- 60S ribosomal protein L26
- Chain 82
- 60S ribosomal protein L32
- Chain 89
- 60S ribosomal protein L39
- Chain L4
- 60S ribosomal protein L4
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