J3_3J79_001

3D structure

PDB id

3J79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAAAC*GUUG*CAUGUCG

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J79|1|A|C|113
3J79|1|A|A|114
3J79|1|A|A|115
3J79|1|A|A|116
3J79|1|A|C|117
*
3J79|1|A|G|160
3J79|1|A|U|161
3J79|1|A|U|162
3J79|1|A|G|163
*
3J79|1|A|C|268
3J79|1|A|A|269
3J79|1|A|U|270
3J79|1|A|G|271
3J79|1|A|U|272
3J79|1|A|C|273
3J79|1|A|G|274

Current chains

Chain A

28S ribosomal RNA

Nearby chains

Chain 3

60S ribosomal protein uL29

Chain J

60S ribosomal protein eL8

Chain L

60S ribosomal protein eL13

Chain P

60S ribosomal protein eL15

Chain b

60S ribosomal protein eL36