J3_3J79_003
3D structure
- PDB id
- 3J79 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GAAAACAAG*UUAAAA*UAUACAGUAC
- Length
- 25 nucleotides
- Bulged bases
- 3J79|1|A|A|448, 3J79|1|A|U|699
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3J79|1|A|G|446
3J79|1|A|A|447
3J79|1|A|A|448
3J79|1|A|A|449
3J79|1|A|A|450
3J79|1|A|C|451
3J79|1|A|A|452
3J79|1|A|A|453
3J79|1|A|G|454
*
3J79|1|A|U|501
3J79|1|A|U|502
3J79|1|A|A|503
3J79|1|A|A|504
3J79|1|A|A|505
3J79|1|A|A|506
*
3J79|1|A|U|692
3J79|1|A|A|693
3J79|1|A|U|694
3J79|1|A|A|695
3J79|1|A|C|696
3J79|1|A|A|697
3J79|1|A|G|698
3J79|1|A|U|699
3J79|1|A|A|700
3J79|1|A|C|701
Current chains
- Chain A
- 28S ribosomal RNA
Nearby chains
- Chain 2
- 60S ribosomal protein eL28
- Chain 8
- 60S ribosomal protein eL32
- Chain 9
- 60S ribosomal protein eL33
- Chain I
- 60S ribosomal protein eL6
- Chain W
- 60S ribosomal protein uL22
Coloring options: