J3_3J79_004
3D structure
- PDB id
- 3J79 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- AUC*GAGGAAUUUUAAA*UUAAGUU
- Length
- 23 nucleotides
- Bulged bases
- 3J79|1|A|A|646, 3J79|1|A|U|647
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3J79|1|A|A|512
3J79|1|A|U|513
3J79|1|A|C|514
*
3J79|1|A|G|641
3J79|1|A|A|642
3J79|1|A|G|643
3J79|1|A|G|644
3J79|1|A|A|645
3J79|1|A|A|646
3J79|1|A|U|647
3J79|1|A|U|648
3J79|1|A|U|649
3J79|1|A|U|650
3J79|1|A|A|651
3J79|1|A|A|652
3J79|1|A|A|653
*
3J79|1|A|U|680
3J79|1|A|U|681
3J79|1|A|A|682
3J79|1|A|A|683
3J79|1|A|G|684
3J79|1|A|U|685
3J79|1|A|U|686
Current chains
- Chain A
- 28S ribosomal RNA
Nearby chains
- Chain 2
- 60S ribosomal protein eL28
- Chain 5
- 60S ribosomal protein uL30
- Chain 8
- 60S ribosomal protein eL32
- Chain 9
- 60S ribosomal protein eL33
- Chain F
- 60S ribosomal protein uL4
- Chain I
- 60S ribosomal protein eL6
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