J3_3J79_005

3D structure

PDB id

3J79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAAUCCCCU*ACU*ACUGG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J79|1|A|C|540
3J79|1|A|A|541
3J79|1|A|A|542
3J79|1|A|U|543
3J79|1|A|C|544
3J79|1|A|C|545
3J79|1|A|C|546
3J79|1|A|C|547
3J79|1|A|U|548
*
3J79|1|A|A|580
3J79|1|A|C|581
3J79|1|A|U|582
*
3J79|1|A|A|608
3J79|1|A|C|609
3J79|1|A|U|610
3J79|1|A|G|611
3J79|1|A|G|612

Current chains

Chain A

28S ribosomal RNA

Nearby chains

Chain F

60S ribosomal protein uL4

Chain N

60S ribosomal protein eL14

Chain U

60S ribosomal protein eL20