J3_3J79_007

3D structure

PDB id

3J79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAG*CGAGUU*AUUUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J79|1|A|G|948
3J79|1|A|A|949
3J79|1|A|G|950
*
3J79|1|A|C|982
3J79|1|A|G|983
3J79|1|A|A|984
3J79|1|A|G|985
3J79|1|A|U|986
3J79|1|A|U|987
*
3J79|1|A|A|1010
3J79|1|A|U|1011
3J79|1|A|U|1012
3J79|1|A|U|1013
3J79|1|A|C|1014

Current chains

Chain A

28S ribosomal RNA

Nearby chains

Chain D

60S ribosomal protein uL2

Chain T

60S ribosomal protein eL19

Chain a

60S ribosomal protein eL34

Chain c

60S ribosomal protein eL37

Chain h

60S ribosomal protein eL43