J3_3J79_008
3D structure
- PDB id
- 3J79 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UU*AAAAG*CAUAUUAA
- Length
- 15 nucleotides
- Bulged bases
- 3J79|1|A|A|1188, 3J79|1|A|A|1221
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3J79|1|A|U|1108
3J79|1|A|U|1109
*
3J79|1|A|A|1185
3J79|1|A|A|1186
3J79|1|A|A|1187
3J79|1|A|A|1188
3J79|1|A|G|1189
*
3J79|1|A|C|1218
3J79|1|A|A|1219
3J79|1|A|U|1220
3J79|1|A|A|1221
3J79|1|A|U|1222
3J79|1|A|U|1223
3J79|1|A|A|1224
3J79|1|A|A|1225
Current chains
- Chain A
- 28S ribosomal RNA
Nearby chains
- Chain 4
- 60S ribosomal protein eL29
- Chain 5
- 60S ribosomal protein uL30
- Chain V
- 60S ribosomal protein eL21
Coloring options: