3D structure

PDB id
3J79 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
UU*AAAAG*CAUAUUAA
Length
15 nucleotides
Bulged bases
3J79|1|A|A|1188, 3J79|1|A|A|1221
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

3J79|1|A|U|1108
3J79|1|A|U|1109
*
3J79|1|A|A|1185
3J79|1|A|A|1186
3J79|1|A|A|1187
3J79|1|A|A|1188
3J79|1|A|G|1189
*
3J79|1|A|C|1218
3J79|1|A|A|1219
3J79|1|A|U|1220
3J79|1|A|A|1221
3J79|1|A|U|1222
3J79|1|A|U|1223
3J79|1|A|A|1224
3J79|1|A|A|1225

Current chains

Chain A
28S ribosomal RNA

Nearby chains

Chain 4
60S ribosomal protein eL29
Chain 5
60S ribosomal protein uL30
Chain V
60S ribosomal protein eL21

Coloring options:

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