J3_3J79_012
3D structure
- PDB id
- 3J79 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- AUAG*UGUUUAAAG*CGU
- Length
- 16 nucleotides
- Bulged bases
- 3J79|1|A|U|1704, 3J79|1|A|A|1706
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3J79|1|A|A|1688
3J79|1|A|U|1689
3J79|1|A|A|1690
3J79|1|A|G|1691
*
3J79|1|A|U|1700
3J79|1|A|G|1701
3J79|1|A|U|1702
3J79|1|A|U|1703
3J79|1|A|U|1704
3J79|1|A|A|1705
3J79|1|A|A|1706
3J79|1|A|A|1707
3J79|1|A|G|1710
*
3J79|1|A|C|1723
3J79|1|A|G|1724
3J79|1|A|U|1725
Current chains
- Chain A
- 28S ribosomal RNA
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain D
- 60S ribosomal protein uL2
- Chain J
- 60S ribosomal protein eL8
- Chain P
- 60S ribosomal protein eL15
- Chain c
- 60S ribosomal protein eL37
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