J3_3J79_015

3D structure

PDB id

3J79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUUAUAA*UUGAACUC*GUA

Length

18 nucleotides

Bulged bases

3J79|1|A|U|1855, 3J79|1|A|U|1965

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J79|1|A|U|1854
3J79|1|A|U|1855
3J79|1|A|U|1856
3J79|1|A|A|1857
3J79|1|A|U|1858
3J79|1|A|A|1859
3J79|1|A|A|1860
*
3J79|1|A|U|1898
3J79|1|A|U|1899
3J79|1|A|G|1900
3J79|1|A|A|1901
3J79|1|A|A|1902
3J79|1|A|C|1903
3J79|1|A|U|1904
3J79|1|A|C|1905
*
3J79|1|A|G|1964
3J79|1|A|U|1965
3J79|1|A|A|1966

Current chains

Chain A

28S ribosomal RNA

Nearby chains

Chain a

60S ribosomal protein eL34

Chain d

60S ribosomal protein eL38