J3_3J79_023
3D structure
- PDB id
- 3J79 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CGAUAGCAAACAAGUAC*GGAAAG*CUUG
- Length
- 27 nucleotides
- Bulged bases
- 3J79|1|A|U|351, 3J79|1|A|A|359, 3J79|1|C|U|27
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3J79_023 not in the Motif Atlas
- Homologous match to J3_8P9A_045
- Geometric discrepancy: 0.059
- The information below is about J3_8P9A_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
3J79|1|A|C|348
3J79|1|A|G|349
3J79|1|A|A|350
3J79|1|A|U|351
3J79|1|A|A|352
3J79|1|A|G|353
3J79|1|A|C|354
3J79|1|A|A|355
3J79|1|A|A|356
3J79|1|A|A|357
3J79|1|A|C|358
3J79|1|A|A|359
3J79|1|A|A|360
3J79|1|A|G|361
3J79|1|A|U|362
3J79|1|A|A|363
3J79|1|A|C|364
*
3J79|1|A|G|371
3J79|1|A|G|372
3J79|1|A|A|373
3J79|1|A|A|374
3J79|1|A|A|375
3J79|1|A|G|376
*
3J79|1|C|C|25
3J79|1|C|U|26
3J79|1|C|U|27
3J79|1|C|G|28
Current chains
- Chain A
- 28S ribosomal RNA
- Chain C
- 5.8S ribosomal RNA
Nearby chains
- Chain F
- 60S ribosomal protein uL4
- Chain Z
- 60S ribosomal protein uL24
- Chain c
- 60S ribosomal protein eL37
- Chain e
- 60S ribosomal protein eL39
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