J3_3J79_024
3D structure
- PDB id
- 3J79 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- AUGAAAUAGUAC*GCAAUUAAAUAGUACC*GU
- Length
- 30 nucleotides
- Bulged bases
- 3J79|1|A|U|383, 3J79|1|A|C|400, 3J79|1|A|U|408, 3J79|1|A|A|412
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3J79|1|A|A|377
3J79|1|A|U|378
3J79|1|A|G|379
3J79|1|A|A|380
3J79|1|A|A|381
3J79|1|A|A|382
3J79|1|A|U|383
3J79|1|A|A|384
3J79|1|A|G|385
3J79|1|A|U|386
3J79|1|A|A|387
3J79|1|A|C|388
*
3J79|1|A|G|399
3J79|1|A|C|400
3J79|1|A|A|401
3J79|1|A|A|402
3J79|1|A|U|403
3J79|1|A|U|404
3J79|1|A|A|405
3J79|1|A|A|406
3J79|1|A|A|407
3J79|1|A|U|408
3J79|1|A|A|409
3J79|1|A|G|410
3J79|1|A|U|411
3J79|1|A|A|412
3J79|1|A|C|413
3J79|1|A|C|414
*
3J79|1|C|G|23
3J79|1|C|U|24
Current chains
- Chain A
- 28S ribosomal RNA
- Chain C
- 5.8S ribosomal RNA
Nearby chains
- Chain F
- 60S ribosomal protein uL4
- Chain W
- 60S ribosomal protein uL22
- Chain Z
- 60S ribosomal protein uL24
- Chain e
- 60S ribosomal protein eL39
Coloring options: