3D structure

PDB id
3J79 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
UAAAAG*CUAUCACC*GCAAUAGUUCUUUAA
Length
29 nucleotides
Bulged bases
3J79|1|A|U|3624, 3J79|1|A|C|3625, 3J79|1|A|U|3662, 3J79|1|A|A|3663, 3J79|1|A|G|3664, 3J79|1|A|U|3665, 3J79|1|A|U|3669, 3J79|1|A|A|3671
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

3J79|1|A|U|3575
3J79|1|A|A|3576
3J79|1|A|A|3577
3J79|1|A|A|3578
3J79|1|A|A|3579
3J79|1|A|G|3580
*
3J79|1|A|C|3621
3J79|1|A|U|3622
3J79|1|A|A|3623
3J79|1|A|U|3624
3J79|1|A|C|3625
3J79|1|A|A|3626
3J79|1|A|C|3627
3J79|1|A|C|3628
*
3J79|1|A|G|3658
3J79|1|A|C|3659
3J79|1|A|A|3660
3J79|1|A|A|3661
3J79|1|A|U|3662
3J79|1|A|A|3663
3J79|1|A|G|3664
3J79|1|A|U|3665
3J79|1|A|U|3666
3J79|1|A|C|3667
3J79|1|A|U|3668
3J79|1|A|U|3669
3J79|1|A|U|3670
3J79|1|A|A|3671
3J79|1|A|A|3672

Current chains

Chain A
28S ribosomal RNA

Nearby chains

Chain 9
60S ribosomal protein eL33
Chain I
60S ribosomal protein eL6
Chain K
60S ribosomal protein uL13
Chain N
60S ribosomal protein eL14
Chain W
60S ribosomal protein uL22

Coloring options:

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