J3_3J79_026
3D structure
- PDB id
- 3J79 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UAAAAG*CUAUCACC*GCAAUAGUUCUUUAA
- Length
- 29 nucleotides
- Bulged bases
- 3J79|1|A|U|3624, 3J79|1|A|C|3625, 3J79|1|A|U|3662, 3J79|1|A|A|3663, 3J79|1|A|G|3664, 3J79|1|A|U|3665, 3J79|1|A|U|3669, 3J79|1|A|A|3671
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3J79|1|A|U|3575
3J79|1|A|A|3576
3J79|1|A|A|3577
3J79|1|A|A|3578
3J79|1|A|A|3579
3J79|1|A|G|3580
*
3J79|1|A|C|3621
3J79|1|A|U|3622
3J79|1|A|A|3623
3J79|1|A|U|3624
3J79|1|A|C|3625
3J79|1|A|A|3626
3J79|1|A|C|3627
3J79|1|A|C|3628
*
3J79|1|A|G|3658
3J79|1|A|C|3659
3J79|1|A|A|3660
3J79|1|A|A|3661
3J79|1|A|U|3662
3J79|1|A|A|3663
3J79|1|A|G|3664
3J79|1|A|U|3665
3J79|1|A|U|3666
3J79|1|A|C|3667
3J79|1|A|U|3668
3J79|1|A|U|3669
3J79|1|A|U|3670
3J79|1|A|A|3671
3J79|1|A|A|3672
Current chains
- Chain A
- 28S ribosomal RNA
Nearby chains
- Chain 9
- 60S ribosomal protein eL33
- Chain I
- 60S ribosomal protein eL6
- Chain K
- 60S ribosomal protein uL13
- Chain N
- 60S ribosomal protein eL14
- Chain W
- 60S ribosomal protein uL22
Coloring options: