J3_3J7A_005
3D structure
- PDB id
- 3J7A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, small subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3J7A_005 not in the Motif Atlas
- Homologous match to J3_4V88_036
- Geometric discrepancy: 0.1586
- The information below is about J3_4V88_036
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52655.2
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
3J7A|1|A|U|1269
3J7A|1|A|G|1270
3J7A|1|A|G|1271
3J7A|1|A|A|1272
*
3J7A|1|A|U|1714
3J7A|1|A|A|1715
3J7A|1|A|C|1716
*
3J7A|1|A|G|1871
3J7A|1|A|G|1872
3J7A|1|A|A|1873
3J7A|1|A|A|1874
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain 7
- Transfer RNA; tRNA
- Chain I
- 40S ribosomal protein uS7
- Chain M
- 40S ribosomal protein uS9
- Chain Y
- 40S ribosomal protein eS19
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