J3_3J7P_020
3D structure
- PDB id
- 3J7P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 80S mammalian ribosome bound to eEF2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GCUUAAUUU*GGGAAACCUCAC*GGCUGC
- Length
- 27 nucleotides
- Bulged bases
- 3J7P|1|S2|G|1256, 3J7P|1|S2|A|1258, 3J7P|1|S2|U|1519
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3J7P_020 not in the Motif Atlas
- Homologous match to J3_8C3A_040
- Geometric discrepancy: 0.5776
- The information below is about J3_8C3A_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.3
- Basepair signature
- cWW-F-F-F-tWW-F-tSH-tSS-cSS-F-F-F-F-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
3J7P|1|S2|G|1236
3J7P|1|S2|C|1237
3J7P|1|S2|U|1238
3J7P|1|S2|U|1239
3J7P|1|S2|A|1240
3J7P|1|S2|A|1241
3J7P|1|S2|U|1242
3J7P|1|S2|U|1243
3J7P|1|S2|U|1244
*
3J7P|1|S2|G|1255
3J7P|1|S2|G|1256
3J7P|1|S2|G|1257
3J7P|1|S2|A|1258
3J7P|1|S2|A|1259
3J7P|1|S2|A|1260
3J7P|1|S2|C|1261
3J7P|1|S2|C|1262
3J7P|1|S2|U|1263
3J7P|1|S2|C|1264
3J7P|1|S2|A|1265
3J7P|1|S2|C|1266
*
3J7P|1|S2|G|1516
3J7P|1|S2|G|1517
3J7P|1|S2|C|1518
3J7P|1|S2|U|1519
3J7P|1|S2|G|1520
3J7P|1|S2|C|1521
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain SP
- Ribosomal protein uS19
- Chain SS
- Ribosomal protein uS13
- Chain SU
- Ribosomal protein uS10
- Chain Sd
- Ribosomal protein uS14
- Chain Sf
- Ribosomal protein eS31
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