3D structure

PDB id
3J7P (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the 80S mammalian ribosome bound to eEF2
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
UAUCAUUG*CCAAGCGUU*ACUAAUA
Length
24 nucleotides
Bulged bases
3J7P|1|5|A|4464
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

3J7P|1|5|U|4463
3J7P|1|5|A|4464
3J7P|1|5|U|4465
3J7P|1|5|C|4466
3J7P|1|5|A|4467
3J7P|1|5|U|4468
3J7P|1|5|U|4469
3J7P|1|5|G|4470
*
3J7P|1|5|C|4485
3J7P|1|5|C|4486
3J7P|1|5|A|4487
3J7P|1|5|A|4488
3J7P|1|5|G|4489
3J7P|1|5|C|4490
3J7P|1|5|G|4491
3J7P|1|5|U|4492
3J7P|1|5|U|4493
*
3J7P|1|5|A|4507
3J7P|1|5|C|4508
3J7P|1|5|U|4509
3J7P|1|5|A|4510
3J7P|1|5|A|4511
3J7P|1|5|U|4512
3J7P|1|5|A|4513

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain B
Ribosomal protein uL3
Chain H
Ribosomal protein uL6
Chain O
Ribosomal protein uL13
Chain V
Ribosomal protein uL14
Chain m
Ribosomal protein eL40

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.3026 s