J3_3J7P_040

3D structure

PDB id

3J7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUGGCAUGC*GAGGGACAAG*CCCGAGAUUG

Length

29 nucleotides

Bulged bases

3J7P|1|S2|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J7P|1|S2|C|1391
3J7P|1|S2|U|1392
3J7P|1|S2|G|1393
3J7P|1|S2|G|1394
3J7P|1|S2|C|1395
3J7P|1|S2|A|1396
3J7P|1|S2|U|1397
3J7P|1|S2|G|1398
3J7P|1|S2|C|1399
*
3J7P|1|S2|G|1447
3J7P|1|S2|A|1448
3J7P|1|S2|G|1449
3J7P|1|S2|G|1450
3J7P|1|S2|G|1451
3J7P|1|S2|A|1452
3J7P|1|S2|C|1453
3J7P|1|S2|A|1454
3J7P|1|S2|A|1455
3J7P|1|S2|G|1456
*
3J7P|1|S2|C|1470
3J7P|1|S2|C|1471
3J7P|1|S2|C|1472
3J7P|1|S2|G|1473
3J7P|1|S2|A|1474
3J7P|1|S2|G|1475
3J7P|1|S2|A|1476
3J7P|1|S2|U|1477
3J7P|1|S2|U|1478
3J7P|1|S2|G|1479

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SD

Ribosomal protein uS3

Chain SF

Ribosomal protein uS7

Chain SQ

Ribosomal protein uS9

Chain SR

Ribosomal protein eS17

Chain SU

Ribosomal protein uS10

Chain Sc

Ribosomal protein eS28

Chain Sd

Ribosomal protein uS14

Chain Sg

Ribosomal protein RACK1