J3_3J7Y_002

3D structure

PDB id

3J7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the large ribosomal subunit from human mitochondria

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CAG*CACAC*GAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3J7Y_002 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.1748

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

3J7Y|1|A|C|1930
3J7Y|1|A|A|1931
3J7Y|1|A|G|1932
*
3J7Y|1|A|C|1942
3J7Y|1|A|A|1943
3J7Y|1|A|C|1944
3J7Y|1|A|A|1945
3J7Y|1|A|C|1946
*
3J7Y|1|A|G|1970
3J7Y|1|A|A|1971
3J7Y|1|A|A|1972
3J7Y|1|A|G|1973

Current chains

Chain A

16S rRNA

Nearby chains

Chain 5

mL37

Chain D

uL2