3D structure

PDB id
3J7Z (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the E. coli 50S subunit with ErmCL nascent chain
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
GC*GCGAAAAGAAC*GAGUGAAAAAGAACC
Length
28 nucleotides
Bulged bases
3J7Z|1|A|A|504, 3J7Z|1|A|A|508
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_3J7Z_015 not in the Motif Atlas
Homologous match to J3_5J7L_066
Geometric discrepancy: 0.1224
The information below is about J3_5J7L_066
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_92134.2
Basepair signature
cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
Number of instances in this motif group
6

Unit IDs

3J7Z|1|A|G|30
3J7Z|1|A|C|31
*
3J7Z|1|A|G|474
3J7Z|1|A|C|475
3J7Z|1|A|G|476
3J7Z|1|A|A|477
3J7Z|1|A|A|478
3J7Z|1|A|A|479
3J7Z|1|A|A|480
3J7Z|1|A|G|481
3J7Z|1|A|A|482
3J7Z|1|A|A|483
3J7Z|1|A|C|484
*
3J7Z|1|A|G|496
3J7Z|1|A|A|497
3J7Z|1|A|G|498
3J7Z|1|A|U|499
3J7Z|1|A|G|500
3J7Z|1|A|A|501
3J7Z|1|A|A|502
3J7Z|1|A|A|503
3J7Z|1|A|A|504
3J7Z|1|A|A|505
3J7Z|1|A|G|506
3J7Z|1|A|A|507
3J7Z|1|A|A|508
3J7Z|1|A|C|509
3J7Z|1|A|C|510

Current chains

Chain A
23S rRNA

Nearby chains

Chain Q
50S ribosomal protein L20
Chain S
50S ribosomal protein L22
Chain U
50S ribosomal protein L24

Coloring options:


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