J3_3J81_004

3D structure

PDB id

3J81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of a partial yeast 48S preinitiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CCAG*CUAGUAA*UGAUUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J81|1|2|C|1160
3J81|1|2|C|1161
3J81|1|2|A|1162
3J81|1|2|G|1163
*
3J81|1|2|C|1579
3J81|1|2|U|1580
3J81|1|2|A|1581
3J81|1|2|G|1582
3J81|1|2|U|1583
3J81|1|2|A|1584
3J81|1|2|A|1585
*
3J81|1|2|U|1607
3J81|1|2|G|1608
3J81|1|2|A|1609
3J81|1|2|U|1610
3J81|1|2|U|1611
3J81|1|2|A|1612
3J81|1|2|C|1613
3J81|1|2|G|1614

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

uS7

Chain Q

uS9

Chain c

eS28

Chain j

eIF2 alpha