J3_3J81_005
3D structure
- PDB id
- 3J81 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of a partial yeast 48S preinitiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3J81_005 not in the Motif Atlas
- Homologous match to J3_4V88_036
- Geometric discrepancy: 0.1533
- The information below is about J3_4V88_036
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52655.2
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
3J81|1|2|U|1167
3J81|1|2|G|1168
3J81|1|2|G|1169
3J81|1|2|A|1170
*
3J81|1|2|U|1466
3J81|1|2|A|1467
3J81|1|2|C|1468
*
3J81|1|2|G|1572
3J81|1|2|G|1573
3J81|1|2|A|1574
3J81|1|2|A|1575
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain 1
- Transfer RNA; tRNA
- Chain F
- uS7
- Chain Q
- uS9
- Chain S
- uS13
- Chain T
- eS19
- Chain j
- eIF2 alpha
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