J3_3J81_016
3D structure
- PDB id
- 3J81 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of a partial yeast 48S preinitiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- AAC*GGACUA*UGGAAGUUU
- Length
- 18 nucleotides
- Bulged bases
- 3J81|1|2|U|1388, 3J81|1|2|U|1411, 3J81|1|2|U|1412
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3J81_016 not in the Motif Atlas
- Homologous match to J3_8C3A_086
- Geometric discrepancy: 0.153
- The information below is about J3_8C3A_086
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_80847.1
- Basepair signature
- cWW-tWH-F-tSW-cWW-tWS-F-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
3J81|1|2|A|1335
3J81|1|2|A|1336
3J81|1|2|C|1337
*
3J81|1|2|G|1384
3J81|1|2|G|1385
3J81|1|2|A|1386
3J81|1|2|C|1387
3J81|1|2|U|1388
3J81|1|2|A|1389
*
3J81|1|2|U|1405
3J81|1|2|G|1406
3J81|1|2|G|1407
3J81|1|2|A|1408
3J81|1|2|A|1409
3J81|1|2|G|1410
3J81|1|2|U|1411
3J81|1|2|U|1412
3J81|1|2|U|1413
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain F
- uS7
- Chain Q
- uS9
- Chain R
- eS17
- Chain U
- uS10
- Chain d
- uS14
- Chain g
- RACK1
Coloring options: