J3_3J8G_011

3D structure

PDB id

3J8G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Electron cryo-microscopy structure of EngA bound with the 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3J8G_011 not in the Motif Atlas

Geometric match to J3_4WF9_010

Geometric discrepancy: 0.1611

The information below is about J3_4WF9_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_60031.2

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

7

Unit IDs

3J8G|1|B|G|30
3J8G|1|B|C|31
*
3J8G|1|B|G|474
3J8G|1|B|C|475
3J8G|1|B|G|476
3J8G|1|B|A|477
3J8G|1|B|A|478
3J8G|1|B|A|479
3J8G|1|B|A|480
3J8G|1|B|G|481
*
3J8G|1|B|C|509
3J8G|1|B|C|510

Current chains

Chain B

23S rRNA

Nearby chains

Chain Q

50S ribosomal protein L20

Chain U

50S ribosomal protein L24