J3_3J92_027

3D structure

PDB id

3J92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure and assembly pathway of the ribosome quality control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGC*GCGACC*GA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3J92_027 not in the Motif Atlas

Homologous match to J3_8P9A_057

Geometric discrepancy: 0.3434

The information below is about J3_8P9A_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J92|1|5|U|2575
3J92|1|5|G|2576
3J92|1|5|C|2577
*
3J92|1|5|G|2584
3J92|1|5|C|2585
3J92|1|5|G|2586
3J92|1|5|A|2587
3J92|1|5|C|2588
3J92|1|5|C|2589
*
3J92|1|5|G|2756
3J92|1|5|A|2757

Current chains

Chain 5

28S rRNA

Nearby chains

Chain Z

eL27

Chain g

eL34