J3_3J9M_002

3D structure

PDB id

3J9M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitochondrial ribosome (class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

3J9M|1|A|G|1918

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3J9M_002 not in the Motif Atlas

Homologous match to J3_7A0S_004

Geometric discrepancy: 0.1302

The information below is about J3_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

3J9M|1|A|C|1915
3J9M|1|A|G|1916
3J9M|1|A|A|1917
3J9M|1|A|G|1918
3J9M|1|A|C|1919
3J9M|1|A|U|1920
3J9M|1|A|A|1921
*
3J9M|1|A|U|1983
3J9M|1|A|A|1984
3J9M|1|A|G|1985
*
3J9M|1|A|C|2001
3J9M|1|A|G|2002
3J9M|1|A|A|2003
3J9M|1|A|G|2004

Current chains

Chain A

16S rRNA

Nearby chains

Chain 2

bL34m

Chain 9

mL41

Chain D

uL2m