J3_3J9M_003

3D structure

PDB id

3J9M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitochondrial ribosome (class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAG*CACAC*GAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3J9M_003 not in the Motif Atlas

Homologous match to J3_5J7L_039

Geometric discrepancy: 0.1603

The information below is about J3_5J7L_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.7

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

3J9M|1|A|C|1930
3J9M|1|A|A|1931
3J9M|1|A|G|1932
*
3J9M|1|A|C|1942
3J9M|1|A|A|1943
3J9M|1|A|C|1944
3J9M|1|A|A|1945
3J9M|1|A|C|1946
*
3J9M|1|A|G|1970
3J9M|1|A|A|1971
3J9M|1|A|A|1972
3J9M|1|A|G|1973

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

uL2m