J3_3J9M_011

3D structure

PDB id

3J9M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitochondrial ribosome (class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AGGA*UAC*GGAU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3J9M_011 not in the Motif Atlas

Homologous match to J3_5J7L_005

Geometric discrepancy: 0.1143

The information below is about J3_5J7L_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_52655.4

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

3J9M|1|AA|A|1198
3J9M|1|AA|G|1199
3J9M|1|AA|G|1200
3J9M|1|AA|A|1201
*
3J9M|1|AA|U|1364
3J9M|1|AA|A|1365
3J9M|1|AA|C|1366
*
3J9M|1|AA|G|1421
3J9M|1|AA|G|1422
3J9M|1|AA|A|1423
3J9M|1|AA|U|1424

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AF

uS7m

Chain AG

uS9m