J3_3J9W_006

3D structure

PDB id

3J9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUUUAAUUC*GAAGAACCUUAC*GGCUAC

Length

27 nucleotides

Bulged bases

3J9W|1|AA|A|968, 3J9W|1|AA|A|985, 3J9W|1|AA|G|986, 3J9W|1|AA|A|988

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J9W|1|AA|G|964
3J9W|1|AA|U|965
3J9W|1|AA|U|966
3J9W|1|AA|U|967
3J9W|1|AA|A|968
3J9W|1|AA|A|969
3J9W|1|AA|U|970
3J9W|1|AA|U|971
3J9W|1|AA|C|972
*
3J9W|1|AA|G|983
3J9W|1|AA|A|984
3J9W|1|AA|A|985
3J9W|1|AA|G|986
3J9W|1|AA|A|987
3J9W|1|AA|A|988
3J9W|1|AA|C|989
3J9W|1|AA|C|990
3J9W|1|AA|U|991
3J9W|1|AA|U|992
3J9W|1|AA|A|993
3J9W|1|AA|C|994
*
3J9W|1|AA|G|1230
3J9W|1|AA|G|1231
3J9W|1|AA|C|1232
3J9W|1|AA|U|1233
3J9W|1|AA|A|1234
3J9W|1|AA|C|1235

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AJ

30S ribosomal protein uS10

Chain AM

30S ribosomal protein uS13

Chain AN

30S ribosomal protein uS14

Chain AS

30S ribosomal protein uS19