J3_3J9W_007

3D structure

PDB id

3J9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUUG*CAG*CUUAUG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3J9W_007 not in the Motif Atlas

Homologous match to J3_6CZR_021

Geometric discrepancy: 0.2324

The information below is about J3_6CZR_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J9W|1|AA|C|1000
3J9W|1|AA|U|1001
3J9W|1|AA|U|1002
3J9W|1|AA|G|1003
*
3J9W|1|AA|C|1055
3J9W|1|AA|A|1056
3J9W|1|AA|G|1057
*
3J9W|1|AA|C|1219
3J9W|1|AA|U|1220
3J9W|1|AA|U|1221
3J9W|1|AA|A|1222
3J9W|1|AA|U|1223
3J9W|1|AA|G|1224

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AN

30S ribosomal protein uS14