J3_3J9W_015

3D structure

PDB id

3J9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAAAC*GGGUUGUA*UG

Length

15 nucleotides

Bulged bases

3J9W|1|BA|U|301

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3J9W_015 not in the Motif Atlas

Homologous match to J3_7RQB_003

Geometric discrepancy: 0.2103

The information below is about J3_7RQB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97921.1

Basepair signature

cWW-F-F-tSH-tWH-F-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

3J9W|1|BA|C|272
3J9W|1|BA|A|273
3J9W|1|BA|A|274
3J9W|1|BA|A|275
3J9W|1|BA|C|276
*
3J9W|1|BA|G|295
3J9W|1|BA|G|296
3J9W|1|BA|G|297
3J9W|1|BA|U|298
3J9W|1|BA|U|299
3J9W|1|BA|G|300
3J9W|1|BA|U|301
3J9W|1|BA|A|302
*
3J9W|1|BA|U|416
3J9W|1|BA|G|417

Current chains

Chain BA

23S ribosomal RNA

Nearby chains