J3_3J9W_017

3D structure

PDB id

3J9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3J9W_017 not in the Motif Atlas

Homologous match to J3_4WF9_003

Geometric discrepancy: 0.1233

The information below is about J3_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.7

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

3J9W|1|BA|C|745
3J9W|1|BA|A|746
3J9W|1|BA|G|747
*
3J9W|1|BA|C|779
3J9W|1|BA|G|780
3J9W|1|BA|A|781
3J9W|1|BA|A|782
3J9W|1|BA|C|783
*
3J9W|1|BA|G|807
3J9W|1|BA|A|808
3J9W|1|BA|U|809
3J9W|1|BA|G|810

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BD

50S ribosomal protein uL2