J3_3J9W_021
3D structure
- PDB id
- 3J9W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UUG*CUAACC*GAGACAG
- Length
- 16 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3J9W_021 not in the Motif Atlas
- Homologous match to J3_4WF9_007
- Geometric discrepancy: 0.141
- The information below is about J3_4WF9_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07703.1
- Basepair signature
- cWW-cWW-tSH-F-F-F-F-F-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
3J9W|1|BA|U|2120
3J9W|1|BA|U|2121
3J9W|1|BA|G|2122
*
3J9W|1|BA|C|2225
3J9W|1|BA|U|2226
3J9W|1|BA|A|2227
3J9W|1|BA|A|2228
3J9W|1|BA|C|2229
3J9W|1|BA|C|2230
*
3J9W|1|BA|G|2251
3J9W|1|BA|A|2252
3J9W|1|BA|G|2253
3J9W|1|BA|A|2254
3J9W|1|BA|C|2255
3J9W|1|BA|A|2256
3J9W|1|BA|G|2257
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain B0
- 50S ribosomal protein bL28
- Chain BD
- 50S ribosomal protein uL2
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