J3_3J9W_027

3D structure

PDB id

3J9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCCUAAU*AGGGAAUCUUC*GAGC

Length

22 nucleotides

Bulged bases

3J9W|1|AA|C|50, 3J9W|1|AA|A|53, 3J9W|1|AA|U|376

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J9W|1|AA|G|48
3J9W|1|AA|C|49
3J9W|1|AA|C|50
3J9W|1|AA|U|51
3J9W|1|AA|A|52
3J9W|1|AA|A|53
3J9W|1|AA|U|54
*
3J9W|1|AA|A|367
3J9W|1|AA|G|368
3J9W|1|AA|G|369
3J9W|1|AA|G|370
3J9W|1|AA|A|371
3J9W|1|AA|A|372
3J9W|1|AA|U|373
3J9W|1|AA|C|374
3J9W|1|AA|U|375
3J9W|1|AA|U|376
3J9W|1|AA|C|377
*
3J9W|1|AA|G|400
3J9W|1|AA|A|401
3J9W|1|AA|G|402
3J9W|1|AA|C|403

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AL

30S ribosomal protein uS12

Chain AP

30S ribosomal protein bS16