J3_3J9W_031
3D structure
- PDB id
- 3J9W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CUUGACAU*ACAG*CUUAUG
- Length
- 18 nucleotides
- Bulged bases
- 3J9W|1|AA|U|1221, 3J9W|1|AA|U|1223
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3J9W_031 not in the Motif Atlas
- Homologous match to J3_5J7L_053
- Geometric discrepancy: 0.1952
- The information below is about J3_5J7L_053
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76475.2
- Basepair signature
- cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW
- Number of instances in this motif group
- 2
Unit IDs
3J9W|1|AA|C|1000
3J9W|1|AA|U|1001
3J9W|1|AA|U|1002
3J9W|1|AA|G|1003
3J9W|1|AA|A|1004
3J9W|1|AA|C|1005
3J9W|1|AA|A|1006
3J9W|1|AA|U|1007
*
3J9W|1|AA|A|1054
3J9W|1|AA|C|1055
3J9W|1|AA|A|1056
3J9W|1|AA|G|1057
*
3J9W|1|AA|C|1219
3J9W|1|AA|U|1220
3J9W|1|AA|U|1221
3J9W|1|AA|A|1222
3J9W|1|AA|U|1223
3J9W|1|AA|G|1224
Current chains
- Chain AA
- 16S ribosomal RNA
Nearby chains
- Chain AN
- 30S ribosomal protein uS14
Coloring options: