J3_3J9W_033

3D structure

PDB id

3J9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGA*UGACUGC*GAGGAAGGUG

Length

20 nucleotides

Bulged bases

3J9W|1|AA|U|1192

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3J9W_033 not in the Motif Atlas

Homologous match to J3_5J7L_054

Geometric discrepancy: 0.1568

The information below is about J3_5J7L_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17791.2

Basepair signature

cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

3J9W|1|AA|U|1126
3J9W|1|AA|G|1127
3J9W|1|AA|A|1128
*
3J9W|1|AA|U|1164
3J9W|1|AA|G|1165
3J9W|1|AA|A|1166
3J9W|1|AA|C|1167
3J9W|1|AA|U|1168
3J9W|1|AA|G|1169
3J9W|1|AA|C|1170
*
3J9W|1|AA|G|1184
3J9W|1|AA|A|1185
3J9W|1|AA|G|1186
3J9W|1|AA|G|1187
3J9W|1|AA|A|1188
3J9W|1|AA|A|1189
3J9W|1|AA|G|1190
3J9W|1|AA|G|1191
3J9W|1|AA|U|1192
3J9W|1|AA|G|1193

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AB

30S ribosomal protein uS2

Chain AI

30S ribosomal protein uS9

Chain AN

30S ribosomal protein uS14