J3_3J9W_039
3D structure
- PDB id
- 3J9W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GCC*GCUUAGUGAUCC*GCUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 3J9W|1|BA|U|2419, 3J9W|1|BA|A|2455
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3J9W_039 not in the Motif Atlas
- Homologous match to J3_5J7L_070
- Geometric discrepancy: 0.1738
- The information below is about J3_5J7L_070
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20992.1
- Basepair signature
- cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
3J9W|1|BA|G|2311
3J9W|1|BA|C|2312
3J9W|1|BA|C|2313
*
3J9W|1|BA|G|2413
3J9W|1|BA|C|2414
3J9W|1|BA|U|2415
3J9W|1|BA|U|2416
3J9W|1|BA|A|2417
3J9W|1|BA|G|2418
3J9W|1|BA|U|2419
3J9W|1|BA|G|2420
3J9W|1|BA|A|2421
3J9W|1|BA|U|2422
3J9W|1|BA|C|2423
3J9W|1|BA|C|2424
*
3J9W|1|BA|G|2450
3J9W|1|BA|C|2451
3J9W|1|BA|U|2452
3J9W|1|BA|C|2453
3J9W|1|BA|A|2454
3J9W|1|BA|A|2455
3J9W|1|BA|C|2456
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain B5
- 50S ribosomal protein bL33
- Chain B7
- 50S ribosomal protein bL35
- Chain BO
- 50S ribosomal protein uL15
- Chain BZ
- 50S ribosomal protein bL27
Coloring options: