J3_3J9Y_006

3D structure

PDB id

3J9Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

3J9Y|1|A|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3J9Y_006 not in the Motif Atlas

Homologous match to J3_5J7L_042

Geometric discrepancy: 0.1216

The information below is about J3_5J7L_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_19545.2

Basepair signature

cWW-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

6

Unit IDs

3J9Y|1|A|C|1306
3J9Y|1|A|A|1307
3J9Y|1|A|A|1308
3J9Y|1|A|G|1309
*
3J9Y|1|A|C|1605
3J9Y|1|A|C|1606
3J9Y|1|A|C|1607
3J9Y|1|A|A|1608
3J9Y|1|A|A|1609
3J9Y|1|A|A|1610
3J9Y|1|A|C|1611
*
3J9Y|1|A|G|1620
3J9Y|1|A|U|1621
3J9Y|1|A|G|1622

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34