J3_3J9Y_008

3D structure

PDB id

3J9Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3J9Y_008 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.0772

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn in J3

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

3J9Y|1|A|C|2091
3J9Y|1|A|U|2092
3J9Y|1|A|G|2093
*
3J9Y|1|A|C|2196
3J9Y|1|A|U|2197
3J9Y|1|A|A|2198
3J9Y|1|A|A|2199
3J9Y|1|A|C|2200
*
3J9Y|1|A|G|2223
3J9Y|1|A|G|2224
3J9Y|1|A|A|2225
3J9Y|1|A|C|2226
3J9Y|1|A|A|2227
3J9Y|1|A|G|2228

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain H

50S ribosomal protein L9

Chain X

50S ribosomal protein L28