J3_3JA1_003

3D structure

PDB id

3JA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

3JA1|1|LA|U|686, 3JA1|1|LA|A|792, 3JA1|1|LA|A|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3JA1_003 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.121

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

3JA1|1|LA|U|683
3JA1|1|LA|G|684
3JA1|1|LA|A|685
3JA1|1|LA|U|686
3JA1|1|LA|C|687
3JA1|1|LA|U|688
3JA1|1|LA|A|689
*
3JA1|1|LA|U|773
3JA1|1|LA|G|774
3JA1|1|LA|G|775
*
3JA1|1|LA|C|791
3JA1|1|LA|A|792
3JA1|1|LA|A|793
3JA1|1|LA|A|794

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain L5

50S ribosomal protein L34

Chain LD

50S ribosomal protein L2