J3_3JA1_011

3D structure

PDB id

3JA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

3JA1|1|LA|A|2518

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3JA1_011 not in the Motif Atlas

Homologous match to J3_5J7L_046

Geometric discrepancy: 0.1418

The information below is about J3_5J7L_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

3JA1|1|LA|C|2517
3JA1|1|LA|A|2518
3JA1|1|LA|U|2519
3JA1|1|LA|C|2520
*
3JA1|1|LA|G|2545
3JA1|1|LA|U|2546
3JA1|1|LA|A|2547
*
3JA1|1|LA|U|2561
3JA1|1|LA|U|2562
3JA1|1|LA|U|2563
3JA1|1|LA|A|2564
3JA1|1|LA|A|2565
3JA1|1|LA|A|2566
3JA1|1|LA|G|2567

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain LM

50S ribosomal protein L14