J3_3JA1_016

3D structure

PDB id

3JA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGG*CUUG*CG

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3JA1_016 not in the Motif Atlas

Geometric match to J3_5J7L_002

Geometric discrepancy: 0.1687

The information below is about J3_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_56052.5

Basepair signature

cWW-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

3JA1|1|SA|C|586
3JA1|1|SA|G|587
3JA1|1|SA|G|588
*
3JA1|1|SA|C|651
3JA1|1|SA|U|652
3JA1|1|SA|U|653
3JA1|1|SA|G|654
*
3JA1|1|SA|C|754
3JA1|1|SA|G|755

Current chains

Chain SA

16S ribosomal RNA

Nearby chains

Chain SH

30S ribosomal protein S8

Chain SL

30S ribosomal protein S12

Chain SO

30S ribosomal protein S15

Chain SQ

30S ribosomal protein S17