J3_3JAG_024

3D structure

PDB id

3JAG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

CCAG*CCAGUAA*UGAUUAAG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAG|1|9|C|1218
3JAG|1|9|C|1219
3JAG|1|9|A|1220
3JAG|1|9|G|1221
*
3JAG|1|9|C|1645
3JAG|1|9|C|1646
3JAG|1|9|A|1647
3JAG|1|9|G|1648
3JAG|1|9|U|1649
3JAG|1|9|A|1650
3JAG|1|9|A|1651
*
3JAG|1|9|U|1673
3JAG|1|9|G|1674
3JAG|1|9|A|1675
3JAG|1|9|U|1676
3JAG|1|9|U|1677
3JAG|1|9|A|1678
3JAG|1|9|A|1679
3JAG|1|9|G|1680

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain 3

Transfer RNA; tRNA

Chain FF

uS7

Chain QQ

uS9

Chain RR

eS17

Chain cc

eS28